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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
15/03/2022 |
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Actualizado : |
05/10/2022 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
MENA, E.; GARAYCOCHEA, S.; STEWART, S.; MONTESANO, M.; PONCE DE LEÓN, I. |
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Afiliación : |
EILYN MENA, Departamento de Biología Molecular, Instituto de Investigaciones Biológicas Clemente Estable; SILVIA RAQUEL GARAYCOCHEA SOLSONA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; SILVINA MARIA STEWART SONEIRA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; MARCOS MONTESANO, Departamento de Biología Molecular, Instituto de Investigaciones Biológicas Clemente Estable; INÉS PONCE DE LEÓN, Departamento de Biología Molecular, Instituto de Investigaciones Biológicas Clemente Estable. |
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Título : |
Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus. |
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Fecha de publicación : |
2022 |
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Fuente / Imprenta : |
BMC Genomics, 2022, volume 23, no. 1, 175. OPEN ACCESS. doi: https://doi.org/10.1186/s12864-022-08413-y |
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ISSN : |
1471-2164 |
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DOI : |
10.1186/s12864-022-08413-y |
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Idioma : |
Inglés |
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Notas : |
Article history: Received 21 October 2021; Accepted 23 February 2022; Published 03 March 2022.
This work was funded by "Agencia Nacional de Investigación e Innovación (ANII) (grant RTS-1-2014, and graduate fellowship)" Uruguay, "Programa de Desarrollo de las Ciencias Básicas (PEDECIBA)" Uruguay, and "Programa para Grupo de I + D Comisión Sectorial de Investigación Científica, Universidad de la República", Uruguay.
Author information: Eilyn Mena and Silvia Garaycochea contributed equally to this work.
Supplementary Information: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-022-08413-y#Sec14 |
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Contenido : |
ABSTRACT. - Background: Diaporthe caulivora is a fungal pathogen causing stem canker in soybean worldwide. The generation of genomic and transcriptomic information of this ascomycete, together with a comparative genomic approach with other pathogens of this genus, will contribute to get insights into the molecular basis of pathogenicity strategies used by D. caulivora and other Diaporthe species.
Results: In the present work, the nuclear genome of D. caulivora isolate (D57) was resolved, and a comprehensive annotation based on gene expression and genomic analysis is provided. Diaporthe caulivora D57 has an estimated size of 57,86?Mb and contains 18,385 predicted protein-coding genes, from which 1501 encode predicted secreted proteins. A large array of D. caulivora genes encoding secreted pathogenicity-related proteins was identified, including carbohydrate-active enzymes (CAZymes), necrosis-inducing proteins, oxidoreductases, proteases and effector candidates. |
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Palabras claves : |
Diaporthe pathogens; Effectors; Genomes; Pathogenicity factors; RNAseq; Secretome; Soybean. |
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Asunto categoría : |
F30 Genética vegetal y fitomejoramiento |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/16809/1/s12864-022-08413-y.pdf
https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-022-08413-y.pdf
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Marc : |
LEADER 02531naa a2200289 a 4500
001 1062833
005 2022-10-05
008 2022 bl uuuu u00u1 u #d
022 $a1471-2164
024 7 $a10.1186/s12864-022-08413-y$2DOI
100 1 $aMENA, E.
245 $aComparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus.$h[electronic resource]
260 $c2022
500 $aArticle history: Received 21 October 2021; Accepted 23 February 2022; Published 03 March 2022. This work was funded by "Agencia Nacional de Investigación e Innovación (ANII) (grant RTS-1-2014, and graduate fellowship)" Uruguay, "Programa de Desarrollo de las Ciencias Básicas (PEDECIBA)" Uruguay, and "Programa para Grupo de I + D Comisión Sectorial de Investigación Científica, Universidad de la República", Uruguay. Author information: Eilyn Mena and Silvia Garaycochea contributed equally to this work. Supplementary Information: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-022-08413-y#Sec14
520 $aABSTRACT. - Background: Diaporthe caulivora is a fungal pathogen causing stem canker in soybean worldwide. The generation of genomic and transcriptomic information of this ascomycete, together with a comparative genomic approach with other pathogens of this genus, will contribute to get insights into the molecular basis of pathogenicity strategies used by D. caulivora and other Diaporthe species. Results: In the present work, the nuclear genome of D. caulivora isolate (D57) was resolved, and a comprehensive annotation based on gene expression and genomic analysis is provided. Diaporthe caulivora D57 has an estimated size of 57,86?Mb and contains 18,385 predicted protein-coding genes, from which 1501 encode predicted secreted proteins. A large array of D. caulivora genes encoding secreted pathogenicity-related proteins was identified, including carbohydrate-active enzymes (CAZymes), necrosis-inducing proteins, oxidoreductases, proteases and effector candidates.
653 $aDiaporthe pathogens
653 $aEffectors
653 $aGenomes
653 $aPathogenicity factors
653 $aRNAseq
653 $aSecretome
653 $aSoybean
700 1 $aGARAYCOCHEA, S.
700 1 $aSTEWART, S.
700 1 $aMONTESANO, M.
700 1 $aPONCE DE LEÓN, I.
773 $tBMC Genomics, 2022, volume 23, no. 1, 175. OPEN ACCESS. doi: https://doi.org/10.1186/s12864-022-08413-y
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Registro original : |
INIA Las Brujas (LB) |
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 | Acceso al texto completo restringido a Biblioteca INIA La Estanzuela. Por información adicional contacte bib_le@inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA La Estanzuela. |
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Fecha actual : |
07/06/2022 |
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Actualizado : |
08/06/2022 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Circulación / Nivel : |
Internacional - -- |
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Autor : |
FERREIRA, G.; CANOZZI, M.E.A.; PERIPOLLI, V.; MOURA, G. P.; SÁNCHEZ, J.; MARTINS, C.E. |
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Afiliación : |
GABRIELLA CARVALHO MATTOS FERREIRA, Curso de Pós-Graduação em Produção e Sanidade Animal (PPGPSA), Instituto Federal Catarinense (IFC), Campus Araquari, Santa Catarina 89245-000, Brazil.; MARÍA EUGENIA ANDRIGHETTO CANOZZI, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; VANESSA PERIPOLLI, Curso de Pós-Graduação em Produção e Sanidade Animal (PPGPSA), Instituto Federal Catarinense (IFC), Campus Araquari, Santa Catarina 89245-000, Brazil.; GABRIELY DE PAULA MOURA, Instituto Federal Catarinense (IFC), Campus Araquari, Santa Catarina 89245-000, Brazi.; JAVIER SÁNCHEZ, Department of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown PE C1A 4P3, Canada.; CARLOS EDUARDO NOGUEIRA MARTINS, Curso de Pós-Graduação em Produção e Sanidade Animal (PPGPSA), Instituto Federal Catarinense (IFC), Campus Araquari, Santa Catarina 89245-000, Brazil. |
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Título : |
Prevalence of bovine Babesia spp., Anaplasma marginale, and their co-infections in Latin America: Systematic review-meta-analysis |
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Fecha de publicación : |
2022 |
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Fuente / Imprenta : |
Ticks and Tick-borne Diseases, 4 July 2022, Volume 13, Issue 4, 101967. doi: https://doi.org/10.1016/j.ttbdis.2022.101967 |
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DOI : |
10.1016/j.ttbdis.2022.101967 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received 10 December 2021, Revised 3 May 2022, Accepted 11 May 2022, Available online 14 May 2022, Version of Record 18 May 2022. Corresponding author: E-mail address: carlos.martins@ifc.edu.br (C.E.N. Martins). |
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Contenido : |
Abstract:
Bovine parasitic sadness, comprised of the diseases babesiosis and anaplasmosis, has a large impact on cattle farming in several countries, as it compromises animal productivity. Using systematic review (SR)-meta-analysis (MA) methodology, our objective was to summarize and to investigate study characteristics associated with prevalence of Babesia spp. and Anaplasma marginale infection in Latin American cattle herds. Five electronic databases were used. The inclusion criteria were studies that assessed the prevalence of Babesia spp. and A. marginale in cattle in Brazil, Argentina, Uruguay, Paraguay, Colombia, and Mexico. The reported prevalences were converted to logistic scale and summarized using random effects MA. The heterogeneity was assessed, separately, for papers from Brazil and from the remaining countries. A total of 28 papers were included in this MA with a high heterogeneity (I2 > 95%). The prevalences of A. marginale, Babesia spp., and their co-infections, in Latin America, were 48.9% (95% CI: 30.3?67.8%), 39.8% (95% CI: 24.6?57.2%), and 26.1% (95% CI: 9.1?55.8%), respectively. The prevalence of A. marginale was higher due to the high prevalence of this agent in Mexico (67.1%). In Brazil, the prevalence was 36.6% for A. marginale, 62.6% for Babesia spp., and 8.2% for their co-infections. The North region of Brazil was reported with the highest prevalence for A. marginale (71.9%), while for Babesia spp., the prevalence was considerably divergent between regions, with the highest values also observed in the North region (97.4%), and the lowest in the South region (9.5%). For studies of Babesia spp. in cattle in Latin America, the heterogeneity was mainly explained by the diagnostic method (98.0%), and country (54.8%). When looking at Brazil alone, a similar pattern was observed, but with lower values (i.e., diagnostic method, 31.5%; region, 25.3%; and climate, 12,4%). The evaluated regions presented different levels of prevalence infections, with most of them being classified as high degree of enzootic instability, which can predispose to the occurrence of outbreaks. MenosAbstract:
Bovine parasitic sadness, comprised of the diseases babesiosis and anaplasmosis, has a large impact on cattle farming in several countries, as it compromises animal productivity. Using systematic review (SR)-meta-analysis (MA) methodology, our objective was to summarize and to investigate study characteristics associated with prevalence of Babesia spp. and Anaplasma marginale infection in Latin American cattle herds. Five electronic databases were used. The inclusion criteria were studies that assessed the prevalence of Babesia spp. and A. marginale in cattle in Brazil, Argentina, Uruguay, Paraguay, Colombia, and Mexico. The reported prevalences were converted to logistic scale and summarized using random effects MA. The heterogeneity was assessed, separately, for papers from Brazil and from the remaining countries. A total of 28 papers were included in this MA with a high heterogeneity (I2 > 95%). The prevalences of A. marginale, Babesia spp., and their co-infections, in Latin America, were 48.9% (95% CI: 30.3?67.8%), 39.8% (95% CI: 24.6?57.2%), and 26.1% (95% CI: 9.1?55.8%), respectively. The prevalence of A. marginale was higher due to the high prevalence of this agent in Mexico (67.1%). In Brazil, the prevalence was 36.6% for A. marginale, 62.6% for Babesia spp., and 8.2% for their co-infections. The North region of Brazil was reported with the highest prevalence for A. marginale (71.9%), while for Babesia spp., the prevalence was considerably divergent between... Presentar Todo |
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Palabras claves : |
Bovine parasitic sadness; Cattle; Epidemiology; Risk factor; Tick-fever. |
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Thesagro : |
ENFERMEDADES DE LOS ANIMALES. |
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Asunto categoría : |
E16 Enfermedades de los animales |
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Marc : |
LEADER 03258naa a2200277 a 4500
001 1063232
005 2022-06-08
008 2022 bl uuuu u00u1 u #d
024 7 $a10.1016/j.ttbdis.2022.101967$2DOI
100 1 $aFERREIRA, G.
245 $aPrevalence of bovine Babesia spp., Anaplasma marginale, and their co-infections in Latin America$bSystematic review-meta-analysis$h[electronic resource]
260 $c2022
500 $aArticle history: Received 10 December 2021, Revised 3 May 2022, Accepted 11 May 2022, Available online 14 May 2022, Version of Record 18 May 2022. Corresponding author: E-mail address: carlos.martins@ifc.edu.br (C.E.N. Martins).
520 $aAbstract: Bovine parasitic sadness, comprised of the diseases babesiosis and anaplasmosis, has a large impact on cattle farming in several countries, as it compromises animal productivity. Using systematic review (SR)-meta-analysis (MA) methodology, our objective was to summarize and to investigate study characteristics associated with prevalence of Babesia spp. and Anaplasma marginale infection in Latin American cattle herds. Five electronic databases were used. The inclusion criteria were studies that assessed the prevalence of Babesia spp. and A. marginale in cattle in Brazil, Argentina, Uruguay, Paraguay, Colombia, and Mexico. The reported prevalences were converted to logistic scale and summarized using random effects MA. The heterogeneity was assessed, separately, for papers from Brazil and from the remaining countries. A total of 28 papers were included in this MA with a high heterogeneity (I2 > 95%). The prevalences of A. marginale, Babesia spp., and their co-infections, in Latin America, were 48.9% (95% CI: 30.3?67.8%), 39.8% (95% CI: 24.6?57.2%), and 26.1% (95% CI: 9.1?55.8%), respectively. The prevalence of A. marginale was higher due to the high prevalence of this agent in Mexico (67.1%). In Brazil, the prevalence was 36.6% for A. marginale, 62.6% for Babesia spp., and 8.2% for their co-infections. The North region of Brazil was reported with the highest prevalence for A. marginale (71.9%), while for Babesia spp., the prevalence was considerably divergent between regions, with the highest values also observed in the North region (97.4%), and the lowest in the South region (9.5%). For studies of Babesia spp. in cattle in Latin America, the heterogeneity was mainly explained by the diagnostic method (98.0%), and country (54.8%). When looking at Brazil alone, a similar pattern was observed, but with lower values (i.e., diagnostic method, 31.5%; region, 25.3%; and climate, 12,4%). The evaluated regions presented different levels of prevalence infections, with most of them being classified as high degree of enzootic instability, which can predispose to the occurrence of outbreaks.
650 $aENFERMEDADES DE LOS ANIMALES
653 $aBovine parasitic sadness
653 $aCattle
653 $aEpidemiology
653 $aRisk factor
653 $aTick-fever
700 1 $aCANOZZI, M.E.A.
700 1 $aPERIPOLLI, V.
700 1 $aMOURA, G. P.
700 1 $aSÁNCHEZ, J.
700 1 $aMARTINS, C.E.
773 $tTicks and Tick-borne Diseases, 4 July 2022, Volume 13, Issue 4, 101967. doi: https://doi.org/10.1016/j.ttbdis.2022.101967
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